Annual Conference of the Working Group
"Statistical Methods in Bioinformatics"

Conference of the NGFN Project
"Good Practice in DNA Microarray Analysis"

2007 November 22-23 in Munich

Organizing Committee: Frank Bretz, Ulrich Mansmann, Jörg Rahnenführer, Juliane Schäfer, Achim Tresch

Homepage IBS
Homepage GMDS
NGFN Microarray Data Analysis Resource
NGFN Homepage


The conference is free of charge and open for registration.
There will be a poster session on Thursday. Participants are invited to bring their posters. For registration, please sent a short note to Achim Tresch.

Number of registered participants:79. We moved to a larger lecture hall! Capacity: 120.

Preliminary Course schedule
 Thursday, Nov 22 - Network Analysis, Systems Biology    
Time
Title
Speaker    
12.30 - 13.00
Registration
     
13.00 - 13.45
Reconstructing Gene Regulatory Networks
with Bayesian Networks by Combining Expression Data
with Multiple Sources of Prior Knowledge.
Abstract.
Slides.
Dirk Husmeier (confirmed)
Biomathematics & Statistics Scotland
Edinburgh, Scotland
 
13.45 - 14.15
Robustness of oscillations in biological networks
Abstract. Slides.
Nicole Radde
IMISE (Institute for Medical Informatics, Statistics
and Epidemiology)
University of Leipzig, Germany
   
14.15 - 15.00
Stucture Learning with prior Information. Slides.
Sach Mukherjee
Dept of Statistics & Warwick Complexity Complex
University of Warwick
Coventry
, United Kingdom
   
15.00 - 15.30
Coffee Break
     
15.30 - 16.15
Nested Effects Models. Abstract. Slides.

Rainer Spang
Institute of Functional Genomics
University of Regensburg,
Regensburg, Germany

   
16.15 - 16.45
Inference of gene regulatory networks
envolved in the process of hepatocyte regeneration.
Abstract Slides.
Sandro Lambeck
Leibniz-Institut für Naturstoff-Forschung
und Infektionsbiologie - Hans-Knöll-Institut e.V.
Jena, Germany
   
16.45 - 17.30
Fine mapping of recombination in S. Cerevisiae:
high-density tiling  arrays and semi-supervised clustering.
Abstract. Slides.
Richard Bourgon
European Bioinformatics Institute
European Molecular Biology Lab, Hinxton
Cambridge, United Kingdom
   
17.30 - 18.30
Poster Session
     
Friday, Nov 23 - Survival Analysis, Quality Control
   
Time
Title
Speaker    
9.00 - 9.45
Quality and Standardization in DNA Microarray
Experiments: The MAQC Project. Abstract. Slides.
Frank Staedtler
Novartis,
Basel, Switzerland
   
9.45 - 10.30
Development and Validation of Class Prediction Models
from Gene Expression Profiles. Abstract. Slides.
Timothy Davison
Asuragen Inc.
Austin TX 78744, USA
   
10.30 - 11.00
Break
     
11.00 - 11.45
Sparse Regression Models in high-dimensional Data.
Slides.
Jelle Goeman
Department of Medical Statistics and Bioinformatics
Leiden University Medical Center
Leiden, The Netherlands
   
11.45 - 12.30
High-dimensional model building for survival data:
How to measure prognostic performance and to
regulate the complexity. Abstract. Slides.
Hans van Houwelingen
Department of Medical Statistics and Bioinformatics
Leiden University Medical Center
Leiden, The Netherlands
   
12.30 - 14.00
Lunch Break
     
14.00 - 14.45
Network-based Analysis of Genomic Data
with Censored Survival Outcomes. Abstract. Slides.
Hongzhe Li
Department of Biostistics and Epidemiology
University of Pennsylvania School of Medicine
Philadelphia, USA
   
14.45 - 15.30
Survival Analysis using Microarray Data - A Case Study
Axel Benner
Central Unit Biostatistics
German Cancer Research Center
Heidelberg, Germany
   
15.30 - 16.00
Personalized Survival Time Prognosis from Microarray
Data using Sparse Cox Regression. Abstract. Slides
Lars Kaderali
Viroquant Research Group Modeling
University of Heidelberg, Germany
   
16.00 - 16.15
Break
     
16.15 - 16.45
Adapting prediction error estimates for biased
complexity selection in high-dimensional bootstrap
samples. Abstract. Slides.
Harald Binder
Department of Medical Biometry and Statistics
Institute of Medical Biometry and Medical Informatics
University Medical Center Freiburg, Germany
   
16.45 - 17.30
The VAML game (Validation and Assessment of
Machine Learning). Abstract. Slides.
Thomas Gerds
Department of Biostatistics
Institute of Public Health, University of Copenhagen
Copenhagen, Denmark
   

How to find us

We meet at the Klinikum Großhadern, Hörsaaltrakt, Floor K O2, Seminarroom 5, Marchioninistraße 15, 81377 München.
Großhadern lies in the south-west of Munich (map). For navigating, you might also find the roadmap and the following directions helpful:
• If you arrive in Munich by plane, take the S-bahn S8 ("Airport line") to Marienplatz.
• If you arrive by train, take any S-bahn or U-bahn to Marienplatz.
• From Marienplatz take U6 to final stop Klinikum Großhadern.
• Leaving the platform, you stand inside a glass pyramid (marked in red in the left figure below).

The red pyramid is the Ubahn-station at which you arrive using U6. The building marked in green is your destination.   This is the inside of the clinical center. The seminarrooms are on the upper right next to the letters "KL".

Accomodation

You will need to make your own accommodation arrangements. We recommend rooms at the Hotel Neumayr, which lies in Großhadern close to the clinical center. If you want to stay closer to the center of Munich, we recommend hotels in Schwabing, which is 15min by U-bahn from Großhadern. Have a look at Hotel Hauser, Hotel Lettl, or Renner Hotel Savoy.

Further information

Please contact Achim Tresch.